Your ROOT_URL in app.ini is https://src.whiteboxsystems.nl/ but you are visiting http://src.whiteboxsystems.nl/Whitebox/u-boot/src/commit/f30f50987a3f9c45c0d580a996d267e7e9688763/configs/sama5d3xek_nandflash_defconfig You should set ROOT_URL correctly, otherwise the web may not work correctly.
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upstream u-boot with additional patches for our devices/boards: https://lists.denx.de/pipermail/u-boot/2017-March/282789.html (AXP crashes) ; Gbit ethernet patch for some LIME2 revisions ; with SPI flash support
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u-boot/configs/sama5d3xek_nandflash_defconfig

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CONFIG_SPL=y
CONFIG_SYS_EXTRA_OPTIONS="SAMA5D3,SYS_USE_NANDFLASH"
+S:CONFIG_ARM=y
+S:CONFIG_ARCH_AT91=y
+S:CONFIG_TARGET_SAMA5D3XEK=y